Yosef Lab

Center for Computational Biology, Electrical Engineering and Computer Sciences @ UC Berkeley

scvi-tools Public
Deep probabilistic analysis of single-cell omics data

Python 618 BSD-3-Clause 213 39 (2 issues need help) 12 Updated Feb 2, 2022
Cassiopeia Public
A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction

Jupyter Notebook 39 MIT 15 5 (3 issues need help) 7 Updated Feb 1, 2022
Keris Public
A framework for identifying systematic variation at the single-cell level by leveraging low-resolution population-level data

R 0 BSD-3-Clause 0 0 0 Updated Jan 31, 2022
scvi-model-zoo Public
Repository of pre-trained scvi models and datasets

Python 0 BSD-3-Clause 0 0 0 Updated Jan 24, 2022
Toxo Public

HTML 0 MIT 0 0 0 Updated Jan 24, 2022
scvi-tools-site Public

JavaScript 0 1 0 0 Updated Jan 23, 2022
Compass Public
In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes

Python 35 BSD-3-Clause 7 20 1 Updated Jan 16, 2022
VISION Public
Signature Analysis and Visualization for Single-Cell RNA-seq

R 77 MIT 20 13 2 Updated Jan 14, 2022
scvi-tools-reproducibility Public
Reproducibility of results/figures from scvi-tools paper

HTML 1 BSD-3-Clause 0 0 0 Updated Jan 13, 2022
scvi-tutorials Public
Notebooks used in scvi-tools tutorials

Jupyter Notebook 16 BSD-3-Clause 8 3 1 Updated Jan 6, 2022

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